The goal of healthgpsrvis is to plot and visualise data related to Health-GPS.
Getting Started
Prerequisites
- RStudio installed
Installation
You can install the development version of healthgpsrvis from GitHub with:
# install.packages("devtools")
devtools::install_github("imperialCHEPI/healthgpsrvis")
# devtools::install_github("imperialCHEPI/healthgpsrvis", ref = "branch-name")Example
This is a basic example which shows you how to solve a common problem:
library(healthgpsrvis)
# Get the path to the .rds file
filepath <- testthat::test_path("testdata", "data_ps3_reformulation")
# Read the .rds file
data <- readRDS(filepath)
# Generate the weighted data
data_weighted <- gen_data_weighted(data)
# Generate the weighted data for the risk factors
data_weighted_rf_wide_collapse <- gen_data_weighted_rf(data_weighted)
# Summarise the weighted data for the risk factors
summary(data_weighted_rf_wide_collapse)
#> time diff_sodium_mean diff_sodium_min diff_sodium_max
#> Min. :2022 Min. :-33.67 Min. :-33.92 Min. :-33.65
#> 1st Qu.:2030 1st Qu.:-33.55 1st Qu.:-33.73 1st Qu.:-33.36
#> Median :2038 Median :-33.24 Median :-33.56 Median :-32.99
#> Mean :2038 Mean :-31.35 Mean :-31.60 Mean :-31.07
#> 3rd Qu.:2047 3rd Qu.:-33.07 3rd Qu.:-33.34 3rd Qu.:-32.54
#> Max. :2055 Max. : 0.00 Max. : 0.00 Max. : 0.00
#> diff_ei_mean diff_ei_min diff_ei_max diff_bmi_mean
#> Min. :-23.15 Min. :-23.19 Min. :-23.14 Min. :-0.1460
#> 1st Qu.:-23.08 1st Qu.:-23.14 1st Qu.:-23.04 1st Qu.:-0.1445
#> Median :-22.88 Median :-23.01 Median :-22.78 Median :-0.1429
#> Mean :-21.58 Mean :-21.67 Mean :-21.48 Mean :-0.1321
#> 3rd Qu.:-22.77 3rd Qu.:-22.92 3rd Qu.:-22.59 3rd Qu.:-0.1409
#> Max. : 0.00 Max. : 0.00 Max. : 0.00 Max. : 0.0000
#> diff_bmi_min diff_bmi_max diff_obesity_mean diff_obesity_min
#> Min. :-0.1470 Min. :-0.1457 Min. :-0.004656 Min. :-0.004688
#> 1st Qu.:-0.1456 1st Qu.:-0.1432 1st Qu.:-0.004463 1st Qu.:-0.004518
#> Median :-0.1438 Median :-0.1417 Median :-0.004195 Median :-0.004245
#> Mean :-0.1329 Mean :-0.1312 Mean :-0.003953 Mean :-0.004009
#> 3rd Qu.:-0.1419 3rd Qu.:-0.1399 3rd Qu.:-0.003997 3rd Qu.:-0.004048
#> Max. : 0.0000 Max. : 0.0000 Max. : 0.000000 Max. : 0.000000
#> diff_obesity_max
#> Min. :-0.004606
#> 1st Qu.:-0.004401
#> Median :-0.004163
#> Mean :-0.003896
#> 3rd Qu.:-0.003922
#> Max. : 0.000000